Amy Ryan, PhD
Introduction
One of the major limitations to studying human lung disease is limited access to primary airway epithelial cells and poor recapitulation of human disease in rodent models, leading to fewer therapies making it to the clinic. To progress toward new therapeutics and eventually cures, it is imperative to study the human lung, including cells from the proximal conducting and distal gas exchange regions across a diverse spectrum of lung disease patients. My research program is focused on the development and utilization of iPSC models of human lung disease to overcome this critical lack of model systems that closely reflect disease pathogenesis as it occurs in humans. The Ryan laboratory focuses on applying in vitro, in vivo, iPSC and 3-D spheroid models including primary lung epithelial cells and state-of-the-art gene editing technologies to a) model and study mechanisms of lung development and disease, and b) investigate approaches for tissue regeneration and stem cell-mediated repair of the airway epithelium. To support this highly innovative program, we have established critical collaborations with clinicians, engineers, large animal research groups and bioinformaticians both within USC and around the world. Our long-term goal is to fully understand specification of specialized airway epithelial cell types from stem and progenitor cells in the human lung in the context of injury, regeneration and disease pathogenesis. Our primary research focus is on rare lung diseases where human samples are particularly difficult to obtain or from end stage disease, namely cystic fibrosis (CF) and primary ciliary dyskinesia (PCD).
I’m a proud mother of two wonderful girls, Maddi (5) and Savannah (2), and I’m lucky to have an amazing husband who works as a Track Operator at the Cedar Rapids BMX Track. I thrive on spending time outdoors, whether it’s hiking, biking, running, or engaging in activities with my family. At home we have a hobby farm with chickens, goats and a potbellied pig called Penelope. I’ve always had a passion for competitive sports and have accomplished feats like completing Ironman triathlons, Ultra runs, adventure races and reached Cat 2 status in road cycling. Since moving to Iowa, I’ve taken up Gravel bike racing. Now, with my kids keenly involved in BMX racing, I find myself actively representing the moms on the track!
Current Positions
- Associate Professor - Anatomy and Cell Biology
Education
- MSc in Pharmacology, University of Bath, Bath, UK
- PhD in Pulmonary Physiology and Biophysics, University of Bath, Bath, UK
- Postdoctoral Fellow in Pulmonary Hypertension, University of San Diego, San Diego, CA
Graduate Program Affiliations
Research Interests
- Our research focuses on fully understanding the differentiation of specialized airway epithelial cells types from stem and progenitor cells in the human lung. We hope to specify the cellular and molecular mechanisms governing the contribution of these cell types to lung regeneration and, in addition, to elucidate the genetic, epigenetic, cellular and molecular factors contributing to disease development and pathogenesis. Please click on the individual projects for more information.
Selected Publications
- Hickmott, RA, Bosakhar, A, Quezada, S, Barresi, M, Walker, DW, Ryan, AL et al.. The One-Stop Gyrification Station - Challenges and New Technologies. Prog Neurobiol. 2021;204 :102111. doi: 10.1016/j.pneurobio.2021.102111. PubMed PMID:34166774 .
- Busch, SM, Lorenzana, Z, Ryan, AL. Implications for Extracellular Matrix Interactions With Human Lung Basal Stem Cells in Lung Development, Disease, and Airway Modeling. Front Pharmacol. 2021;12 :645858. doi: 10.3389/fphar.2021.645858. PubMed PMID:34054525 PubMed Central PMC8149957.
- Carraro, G, Langerman, J, Sabri, S, Lorenzana, Z, Purkayastha, A, Zhang, G et al.. Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition. Nat Med. 2021;27 (5):806-814. doi: 10.1038/s41591-021-01332-7. PubMed PMID:33958799 .
- Campbell, DR Jr, Senger, CN, Ryan, AL, Magin, CM. Engineering Tissue-Informed Biomaterials to Advance Pulmonary Regenerative Medicine. Front Med (Lausanne). 2021;8 :647834. doi: 10.3389/fmed.2021.647834. PubMed PMID:33898484 PubMed Central PMC8060451.
- Hynds, RE, Zacharias, WJ, Nikolić, MZ, Königshoff, M, Eickelberg, O, Gosens, R et al.. National Heart, Lung, and Blood Institute and Building Respiratory Epithelium and Tissue for Health (BREATH) Consortium Workshop Report: Moving Forward in Lung Regeneration. Am J Respir Cell Mol Biol. 2021;65 (1):22-29. doi: 10.1165/rcmb.2020-0397WS. PubMed PMID:33625958 PubMed Central PMC8320125.
- Wagner, DE, Ikonomou, L, Gilpin, SE, Magin, CM, Cruz, F, Greaney, A et al.. Stem Cells, Cell Therapies, and Bioengineering in Lung Biology and Disease 2019. ERJ Open Res. 2020;6 (4):. doi: 10.1183/23120541.00123-2020. PubMed PMID:33123557 PubMed Central PMC7569162.
- Hor, P, Ichida, JK, Borok, Z, Ryan, AL. Protocol for Differentiation of Human iPSCs into Pulmonary Neuroendocrine Cells. STAR Protoc. 2020;1 (2):100068. doi: 10.1016/j.xpro.2020.100068. PubMed PMID:33111106 PubMed Central PMC7580194.
- Parekh, KR, Nawroth, J, Pai, A, Busch, SM, Senger, CN, Ryan, AL et al.. Stem cells and lung regeneration. Am J Physiol Cell Physiol. 2020;319 (4):C675-C693. doi: 10.1152/ajpcell.00036.2020. PubMed PMID:32783658 PubMed Central PMC7654650.
- Ogawa, J, Zhu, W, Tonnu, N, Singer, O, Hunter, T, Ryan, AL et al.. The D614G mutation in the SARS-CoV2 Spike protein increases infectivity in an ACE2 receptor dependent manner. bioRxiv. 2020; :. doi: 10.1101/2020.07.21.214932. PubMed PMID:32743569 PubMed Central PMC7386486.
- Ikonomou, L, Wagner, DE, Gilpin, SE, Weiss, DJ, Ryan, AL. Technological advances in study of lung regenerative medicine:perspective from the 2019 Vermont lung stem cell conference. Cytotherapy. 2020;22 (10):519-520. doi: 10.1016/j.jcyt.2020.04.001. PubMed PMID:32507605 .