Contact us

We recommend that you contact us prior to beginning any experiments requiring bioinformatics analyses to help ensure success of the project.  Our input on experiment design can usually save you money and improve the chances of success in many types of NGS experiments. 

Request bioinformatics consult

Services

Analysis methods we can do
  • Bulk RNA-Seq
  • ChIP-Seq
  • ATAC-Seq
  • TRAP-Seq
  • Multi-omics integration (Mixomics, sPLS-DA)
  • VISIUM Spatial single-cell RNAseq
  • 10X Single-cell RNA-seq 
  • Pathway Analysis with award-winning iPathwayGuide pro software
  • Exome/Whole Genome variant calling and filtering with DRAGEN BIO-IT genomics engine (on-premise) 
  • Metabolomics analysis
  • MinION and ONT long read transcriptomics, isoform DE testing, variation, and methylation
  • and many more... 

Additional support outside of the analysis
  • Grant review and letters of support
  • Figure and table generation for manuscripts
  • Experimental design review and consulting

Custom work

We can research, adapt and perform a variety of more custom or emerging techniques. We are happy to meet to discuss the feasibility of developing or implementing any bioinformatics analysis. 

Pricing

As the quantity and complexity of datasets increase exponentially, so does the complexity of the analysis methods available and the questions that can be asked of the data.  Please budget a significant fraction of your total spending on the library prep and sequencing data generation for the analysis of those data.

Discounts on the "per-sample" price can be applied for large projects (>48 samples). 

Methods sections and results figures for manuscripts can be produced to help you publish your project (billed hourly).

Billing

How the IIHG processes billing

Billing is processed once  per month in conjunction with the Genomics Division projects. On-campus accounts are billed against a valid MFK. Off-campus accounts are invoiced at the end of each billing period. Payment is accepted via check, ach, or credit card. 

Example

A typical RNA-seq project might be billed as follows: 
  • $500 project setup fee (initial consultation, copy data, merge fastqs, setup pipeline, troubleshoot, review QC)
  • $75 per sample (pipeline run to generate BAM files and counts, exploratory PCA, DEG analysis)
  • $100  per pathway analysis report (iPathwayGuide software)
  • $500 / NCBI GEO data cataloging and upload for GEO accession creation and GEO access management (optional)
  • Follow up consultation meetings are available  (Included)
  • 3-years data archiving and backup on secure IIHG servers  (Included)

Example project: 20 sample mouse RNA-seq analysis 

$500 project setup fee + ($75 per sample fee x 20) + ($100 pathway analysis reports x 3):  Total = $2300