Ingenuity Pathway Analysis (IPA) Hands-on Workshop
Wednesday, December 20, 2023
8:30am-2:30pm
Location: Hardin Library for Health Sciences - Information Commons East
Agenda:
8:30am-9:00am
- Check-in
- Troubleshoot IPA access (highly encouraged)
- Continental breakfast provided
9:00am-12:00pm
Pathway Analysis on 'Omic Data
- Perform pathway analysis on user’s data
- Dataset format, upload, and pathway/core analysis
- Discover key biological mechanisms, regulators and targets
- Compare different groups (time points, treatments, single cell clusters etc.)
- Activity heatmap for pathways, regulators and biological functions
- Compare contrast activity of pathways, biological functions and regulators
- Discover condition specific biomarkers
- Compare user data with public data
- Analysis Match heatmap
- Generate network using genes, chemicals, and disease of interest even without dataset
- Predict activity of custom network using Molecule Activity Predictor
12:00pm-1:00pm
QIAGEN CLC Genomics Workbench Lunch and Learn - lunch is provided
1:00pm-2:30pm
Mine IPA's rich database for novel discoveries
Users will learn how to:
- Leverage public data
- Easily search and open pathway analyses of public data (GEO, SRA, etc.)
- Study biological mechanisms and discover key regulators/drug targets
- Identify gene signatures and key regulators common across datasets
- Edit, expand, modify, and overlay public data on a network for genes, chemicals and diseases of interest
- Study gene or biomarker expression across different tissues, diseases, cell types and more from public sources