10X Genomics Loupe Single Cell Browser Explained in 7 minutes: This video is a short introduction to the 10X Genomics desktop single-cell browser software called "Loupe Cell Browser."
Introduction to RNA-Seq for Researchers: This screencast is an adaptation of a talk Michael Chimenti gave here at the University of Iowa for the TEK talks series this fall, 2017. It provides an overview of RNA-Seq generally, and then delves into each of the steps providing tips and best practices along the way.
RNA-seq results explained: what you can expect from an analysis: In this video, Michael Chimenti briefly explains what you can expect to get back from us when you collaborate with the Iowa Institute of Human Genetics Bioinformatics core to analyze your RNA-Seq experiments.
Quick Start Guide to Running Ingenuity Pathway Analysis (IPA): In this video, we will discuss how to quickly get started running an IPA core analysis. This includes uploading external data, formatting it to work with IPA, and setting filters on gene features.
RNA-Seq with Kallisto and Sleuth (Part 1 was a classroom lecture):
IIHG Intro to Kallisto for RNA-Seq | Part 2 of 3: A brief introduction to the theory and method underlying kallisto for transcript quantification of RNA-Seq data.
IIHG Intro to Sleuth for RNA-Seq | Part 3 of 3: A brief introduction to the Sleuth R Shiny app for doing exploratory data analysis of your RNA-Seq data. This tutorial assumes that the data have been already quantified with kallisto and processed into a sleuth object with the sleuth r library.
Working with UCSC Genome Browser:
IIHG Intro to the UCSC Genome Browser | Part 1 of 5:
IIHG Intro to the UCSC Genome Browser | Part 2 of 5:
IIHG Intro to the UCSC Genome Browser | Part 3 of 5: