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Maria Spies, PhD

Professor of Biochemistry and Molecular Biology

Introduction

Work in my lab focuses on genome caretakers at the intersection of the 3Rs of DNA maintenance, Replication, Recombination and DNA Repair. Understanding the molecular bases and regulation of these processes is fundamentally important because accumulation or incomplete repair of DNA lesions can lead to genetic instability and chromosomal rearrangements causing cancer and cell senescence, while erroneous attempts to reestablish stalled or collapsed replication forks may result in diseases associated with progressive expansion of repeated sequences (such as myotonic dystrophy and Fragile X, syndrome among many others). We study DNA repair at the most fundamental level by first deconstructing the macromolecular ensembles orchestrating distinct DNA repair events down to the level of individual proteins. By combining physical and single-molecule biochemistry, we then investigate molecular mechanisms of the key players in these DNA repair pathways and how other protein partners and posttranslational modifications affect their action. We are also developing novel experimental approaches allowing us to sort and interrogate individual macromolecular complexes extracted from human cells and tissue samples. The resulting integrated in vivo – in vitro – in singulo approach is aimed at identifying features of genome caretaker proteins that can be exploited in designing the new therapeutics. Current projects in our lab focus on regulation of RAD51 protein, which orchestrates the central step of homologous genetic recombination, on deciphering the molecular mechanisms and regulation of several motor proteins (FBH1, FANCJ, RTEL, CHLR1 and XPD) involved in control of RAD51-mediated recombination, replication fork progression and chromosome segregation, as well as on interplay between recombination and mismatch repair.

Current Positions

  • Professor of Biochemistry and Molecular Biology
  • Professor of Radiation Oncology

Education

  • BS in Physics/Biophysics, Peter the Great St. Petersburg Polytechnic University (aka Kalinin Leningrad Polytechnic Institute, Leningrad, Russia), St. Petersburg, Russia
  • MS in Physics/Biophysics, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
  • PhD in Biological Sciences/Structural Biology, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan

Graduate Program Affiliations

Center, Program and Institute Affiliations

Research Interests

  • DNA repair, replication, homologous recombination, genome stability, drug discovery

Selected Publications

  • Honda M, Razzaghi M, Gaur P, Malacaria E, Marozzi G, Biagi LD, Aiello FA, Paintsil EA, Stanfield AJ, Deppe BJ, Gakhar L, Schnicker NJ, Ashley Spies M, Pichierri P, Spies M (2024). A double-ring of human RAD52 remodels replication forks restricting fork reversal. bioRxiv. 2024 Sep 18;. doi: 10.1101/2023.11.14.566657. PubMed PMID: 38014173; PubMed Central PMCID: PMC10680749.
  • Granger SL, Sharma R, Kaushik V, Razzaghi M, Honda M, Gaur P, Bhat DS, Labenz SM, Heinen JE, Williams BA, Tabei SMA, Wlodarski MW, Antony E, Spies M (2024). Human hnRNPA1 reorganizes telomere-bound Replication Protein A. bioRxiv. 2024 Apr 3;. doi: 10.1101/2023.05.09.540056. PubMed PMID: 37214874; PubMed Central PMCID: PMC10197631.
  • Kuppa S, Corless E, Caldwell CC, Spies M, Antony E (2024). Generation of site-specifically labelled fluorescent human XPA to investigate DNA binding dynamics during nucleotide excision repair. Methods. 2024 Apr;224:47-53. doi: 10.1016/j.ymeth.2024.02.006. Epub 2024 Feb 20. PubMed PMID: 38387709; PubMed Central PMCID: PMC10960328.
  • Hengel SR, Oppenheimer K, Smith C, Schaich MA, Rein HL, Martino J, Darrah K, Ezekwenna O, Burton K, Van Houten B, Spies M, Bernstein KA (2024). The human Shu complex promotes RAD51 activity by modulating RPA dynamics on ssDNA. bioRxiv. 2024 Feb 15;. doi: 10.1101/2024.02.14.580393. PubMed PMID: 38405734; PubMed Central PMCID: PMC10888808.
  • Gaur P, Bain FE, Honda M, Granger SL, Spies M (2023). Single-Molecule Analysis of the Improved Variants of the G-Quadruplex Recognition Protein G4P. Int J Mol Sci. 2023 Jun 17;24(12). doi: 10.3390/ijms241210274. PubMed PMID: 37373425; PubMed Central PMCID: PMC10299155.
  • Honda M , Razzaghi M , Gaur P, Malacaria E, Di Biagi L, Aiello FA, Paintsil E, Stanfield A, Deppe BJ, Gakhar L, Schniker N, Spies MA, Pichierri P, Spies M (2023). A double-ring of human RAD52 remodels replication forks restricting fork reversal. 2023, bioRxiv https://doi.org/10.1101/2023.11.14.566657
  • Mo J, Borcherding N, Jo S, Tithi TI, Cho E, Cash CE, Honda M, Wang L, Ahmed KK, Weigel R, Spies M, Kolb R,  Zhang W (2023). Contrasting roles of different mismatch repair proteins in basal-like breast cancer. 2023 bioRxiv  https://doi.org/10.1101/2023.07.20.549745; PMID: 37745359
  • Bayanbold K, Singhania M, Fath MA, Searby CS, Stolwijk JM, Henrich JB, Pulliam CF, Schoenfeld JD, Mapuskar KA, Sho S, Caster JM, Allen BG, Buettner GR, Spies M, Goswami P, Petronek MS, Spitz DR (2023). Depletion of Labile Iron Induces Replication Stress and Enhances Responses to Chemoradiation in Non-Small-Cell Lung Cancer. Antioxidants. 2023 2023 Nov 15;12(11):2005. doi: 10.3390/antiox12112005; PMID: 38001858
  • Sharma R, Oak N, Chen W, Gogal R, Kirschner M, Beier F Schnieders MJ, Spies M, Nichols K, Wlodarski MW (2023). Germline landscape of RPA1, RPA2 and RPA3 mutations in pediatric malignancies: identification of RPA1 as a novel cancer candidate gene. Front Oncol. 2023 Oct 6;13:1229507. doi: 10.3389/fonc.2023.1229507. eCollection 2023; PMID: 37869077, PMCID: PMC10588448
  • Hong, L., Zhao, Y., Braden, D.C., Skoko, J.J., Chang, F., Woodcock, S.R., Uvalle, C., Casey, A., Wood, K., Salvatore, S.R., Asan, A., Harkness, T., Fagunloye, A., Razzaghi, M., Straub, A., Spies, M., Brown, D.D., Lee, A.V., Schopfer, F., Freeman, B.A., and Neumann, C.A., Small molecule nitroalkenes inhibit RAD51-mediated homologous recombination and amplify triple-negative breast cancer cell killing by DNA-directed therapies. 2023, Redox Biol. Volume 66, October 2023, 102856, PMID: 37633047