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Ingenuity Pathway Analysis (IPA) Hands-on Workshop

Agenda:

8:30–9 a.m.

  • Check-in
  • Troubleshoot IPA access (highly encouraged)
  • Continental breakfast provided

9 a.m.–noon

Pathway Analysis on 'Omic Data

  • Perform pathway analysis on user’s data
    • Dataset format, upload, and pathway/core analysis
    • Discover key biological mechanisms, regulators and targets
  • Compare different groups (time points, treatments, single cell clusters etc.)
    • Activity heat map for pathways, regulators and biological functions
    • Compare contrast activity of pathways, biological functions and regulators
    • Discover condition specific biomarkers
  • Compare user data with public data
    • Analysis Match heat map
  • Generate network using genes, chemicals, and disease of interest even without dataset
    • Predict activity of custom network using Molecule Activity Predictor

Noon–1 p.m.

QIAGEN CLC Genomics Workbench Lunch and Learn—lunch is provided

 

1–2:30 p.m.

Mine IPA's rich database for novel discoveries

Users will learn how to:

  • Leverage public data
    • Easily search and open pathway analyses of public data (GEO, SRA, etc.)
    • Study biological mechanisms and discover key regulators/drug targets
    • Identify gene signatures and key regulators common across datasets
  • Edit, expand, modify, and overlay public data on a network for genes, chemicals and diseases of interest
  • Study gene or biomarker expression across different tissues, diseases, cell types and more from public sources

Individuals with disabilities are encouraged to attend all University of Iowa–sponsored events. If you are a person with a disability who requires a reasonable accommodation in order to participate in this program, please contact Iowa Institute of Human Genetics in advance at (319)335-3688 or iihg-bioinformatics@uiowa.edu