Ingenuity Pathway Analysis (IPA) Hands-on Workshop

Agenda:

8:30–9 a.m.

• Check-in
• Troubleshoot IPA access (highly encouraged)
• Continental breakfast provided

9 a.m.–noon

Pathway Analysis on 'Omic Data

• Perform pathway analysis on user’s data
  • Dataset format, upload, and pathway/core analysis
  • Discover key biological mechanisms, regulators and targets
• Compare different groups (time points, treatments, single cell clusters etc.)
  • Activity heat map for pathways, regulators and biological functions
  • Compare contrast activity of pathways, biological functions and regulators
  • Discover condition specific biomarkers
• Compare user data with public data
  • Analysis Match heat map
• Generate network using genes, chemicals, and disease of interest even without dataset
  • Predict activity of custom network using Molecule Activity Predictor

Noon–1 p.m.

QIAGEN CLC Genomics Workbench Lunch and Learn—lunch is provided

1–2:30 p.m.

Mine IPA's rich database for novel discoveries

Users will learn how to:

• Leverage public data
  • Easily search and open pathway analyses of public data (GEO, SRA, etc.)
  • Study biological mechanisms and discover key regulators/drug targets
  • Identify gene signatures and key regulators common across datasets
• Edit, expand, modify, and overlay public data on a network for genes, chemicals and diseases of interest
• Study gene or biomarker expression across different tissues, diseases, cell types and more from public sources